- Implemented \`applyDefaultServerConfig\` in \`Engine\` to apply \`serverProtocols\` to \`http.Server\`.
- Uncommented all calls to \`applyDefaultServerConfig\` in \`serve.go\`.
- Refactored \`SetProtocols\` and added internal \`setProtocols\` to ensure user-defined protocols are not overwritten by framework defaults in \`RunTLS\`.
- Added exhaustive tests in \`protocols_test.go\` to verify protocol inheritance and persistence.